STRINGSTRING
Phatrdraft1684 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatrdraft1684" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatrdraft1684Predicted protein (620 aa)    
Predicted Functional Partners:
Phatr23324
Predicted protein (176 aa)
       
  0.619
Phatr51040
Predicted protein (607 aa)
       
  0.612
Phatr31919
Predicted protein (305 aa)
       
  0.473
CYCB2
Predicted protein (64 aa)
     
  0.456
CYCB1
Predicted protein (303 aa)
     
  0.456
dsCYC3
Predicted protein (301 aa)
     
  0.456
CYCD1
Predicted protein (222 aa)
     
  0.456
SUMO
Small ubiquitin-like modifier (103 aa)
       
  0.436
Phatr12578
Predicted protein (68 aa)
       
  0.436
Phatr10539
Predicted protein (328 aa)
       
  0.430
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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