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DXS protein (Phaeodactylum tricornutum) - STRING interaction network
"DXS" - Precursor of synthase DXS 1-deoxy-d-xylulose-5-phosphate synthase in Phaeodactylum tricornutum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DXSPrecursor of synthase DXS 1-deoxy-d-xylulose-5-phosphate synthase (730 aa)    
Predicted Functional Partners:
DXR
1-deoxy-d-xylulose-5-phosphate reductoisomerase (402 aa)
 
 
  0.988
HDS
Putative chloroplast 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (757 aa)
 
 
  0.784
Phatr12330
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (159 aa)
 
     
  0.771
Phatr19000
Farnesyltranstransferase (337 aa)
 
   
  0.732
CMK
4-diphosphocytidyl-2c-methyl-d-erythritol kinase (355 aa)
 
   
  0.729
Phatr12107
Predicted protein (460 aa)
   
   
  0.627
HDR
Putative plastid isopentenyl diphosphate/dimethylallyl diphosphate synthase (401 aa)
 
 
  0.601
PSY
Phytoene synthase (309 aa)
         
  0.586
Phatr49325
Predicted protein (343 aa)
   
   
  0.565
Phatr47271
Predicted protein (330 aa)
   
   
  0.565
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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