STRINGSTRING
Phatrdraft1763 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatrdraft1763" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatrdraft1763Predicted protein (810 aa)    
Predicted Functional Partners:
Phatr43680
Predicted protein (1458 aa)
     
      0.563
Phatr42571
Ubiquitin carboxyl-terminal hydrolase (1319 aa)
     
  0.433
PHATR_3692
Predicted protein (347 aa)
     
  0.433
Phatr2936
Predicted protein (344 aa)
     
  0.433
Phatr12752
Predicted protein (348 aa)
     
  0.433
Phatr13221
Predicted protein (208 aa)
       
    0.427
Phatr974
Predicted protein (603 aa)
     
 
  0.421
Phatr47704
Ubiquitin carboxyl-terminal hydrolase (1183 aa)
     
 
  0.421
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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