STRINGSTRING
Phatrdraft192 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatrdraft192" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatrdraft192Predicted protein (173 aa)    
Predicted Functional Partners:
Phatr9987
Predicted protein (350 aa)
 
          0.488
GltX
Ferredoxin-dependent glutamate synthase, fusion of large and small subunits (1591 aa)
     
   
  0.460
Phatr24739
Predicted protein (1594 aa)
     
   
  0.460
Phatr27735
Predicted protein (538 aa)
         
  0.442
P5CS
Delta l-pyrroline-5-carboxylate synthetase (747 aa)
           
  0.410
Phatr18027
Predicted protein (706 aa)
           
  0.410
Phatr52174
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1143 aa)
       
 
  0.410
Phatr13581
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1165 aa)
       
 
  0.410
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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