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Phatrdraft231 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatrdraft231" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatrdraft231Predicted protein (93 aa)    
Predicted Functional Partners:
ARL1
Predicted protein (184 aa)
        
0.501
Rab6
Predicted protein (236 aa)
        
  0.492
Phatr33394
Predicted protein (175 aa)
        
  0.476
Phatr17936
Predicted protein (206 aa)
        
      0.463
Arf1
Predicted protein (184 aa)
        
0.413
Ras1
Predicted protein (191 aa)
        
  0.400
Rab11
Predicted protein (214 aa)
        
  0.400
Rab2
Predicted protein (210 aa)
        
  0.400
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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