STRINGSTRING
Phatrdraft278 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatrdraft278" - Predicted protein in Phaeodactylum tricornutum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatrdraft278Predicted protein (77 aa)    
Predicted Functional Partners:
IscS
Precursor of desulfurase cysteine desulfurase IscS (400 aa)
   
  0.817
CsdB
Selenocysteine lyase (386 aa)
   
  0.817
IscU
Iron-sulphur assembly protein isc; Scaffold protein for the de novo synthesis of iron- sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins (160 aa)
   
 
  0.692
Phatr46641
Predicted protein (1036 aa)
       
  0.650
Phatr14867
Predicted protein (88 aa)
   
 
  0.635
Phatr11154
Predicted protein (105 aa)
   
 
  0.635
Phatr7780
Predicted protein (122 aa)
   
 
  0.634
Phatr4593
Predicted protein (182 aa)
   
 
  0.619
Phatr19821
Predicted protein; Component of the cytosolic iron-sulfur (Fe/S) protein assembly (CIA) machinery. Required for maturation of extramitochondrial Fe-S proteins. The NUBP1-NUBP2 heterotetramer forms a Fe-S scaffold complex, mediating the de novo assembly of an Fe-S cluster and its transfer to target apoproteins (368 aa)
   
 
  0.619
Phatr16719
Predicted protein (182 aa)
   
 
  0.619
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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