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STRINGSTRING
Phatrdraft348 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatrdraft348" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatrdraft348Predicted protein (521 aa)    
Predicted Functional Partners:
Phatr20547
Homeobox protein (646 aa)
 
 
  0.952
IPMDH
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate (416 aa)
 
   
  0.870
Phatr37341
annotation not available (628 aa)
 
   
  0.836
Phatr54355
Carboxylyase; Belongs to the TPP enzyme family (667 aa)
 
   
  0.818
Phatr41702
Predicted protein (671 aa)
   
   
  0.787
Phatr10757
Predicted protein (345 aa)
   
   
  0.658
Phatr30660
Predicted protein (273 aa)
     
   
  0.644
Phatr10025
Predicted protein (295 aa)
   
   
  0.619
Phatr44618
2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family (663 aa)
   
   
  0.613
Phatr38362
2-isopropylmalate synthase (581 aa)
   
   
  0.613
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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