STRINGSTRING
Phatrdraft348 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatrdraft348" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatrdraft348Predicted protein (521 aa)    
Predicted Functional Partners:
Phatr20547
Homeobox protein (646 aa)
 
  0.957
Phatr37341
Annotation not available (628 aa)
 
 
  0.870
Phatr54355
Carboxylyase (667 aa)
 
 
  0.840
Phatr24772
Predicted protein (801 aa)
 
   
  0.840
IPMDH
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate (416 aa)
 
   
  0.731
Phatrdraft1517
Predicted protein (129 aa)
   
 
  0.678
Phatr50806
Predicted protein (588 aa)
   
 
  0.678
Phatr43697
Branched-chain-amino-acid aminotransferase (356 aa)
   
 
  0.678
Phatr41496
Predicted protein (137 aa)
   
 
  0.678
Phatr32849
Predicted protein (299 aa)
   
 
  0.678
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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