STRINGSTRING
Phatrdraft371 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatrdraft371" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatrdraft371Predicted protein (308 aa)    
Predicted Functional Partners:
Phatr44670
Predicted protein (317 aa)
 
   
  0.774
FAO1
Peroxisomal bifunctional enzyme (767 aa)
     
  0.730
Phatr35240
Predicted protein (684 aa)
     
  0.730
Phatr46146
Predicted protein (568 aa)
   
 
  0.629
CCL1
Coumaryl-coa ligase (523 aa)
   
 
  0.616
Phatr48666
Predicted protein (1643 aa)
   
 
  0.616
Phatr43214
Predicted protein (1657 aa)
   
 
  0.616
Phatr41238
Predicted protein (738 aa)
   
 
  0.616
ACC2
Biotin carboxylase (2282 aa)
       
  0.587
Phatr11811
Enoyl-coa hydratase (203 aa)
 
   
  0.556
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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