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Phatrdraft392 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatrdraft392" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatrdraft392Predicted protein (320 aa)    
Predicted Functional Partners:
Phatr47067
Predicted protein (1237 aa)
   
      0.458
Phatr9235
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1147 aa)
   
   
  0.430
Phatr10902
Predicted protein (473 aa)
         
  0.425
Phatrdraft1812
Predicted protein (609 aa)
     
 
  0.413
Phatr5512
Predicted protein (250 aa)
   
      0.410
Phatr8112
Predicted protein (88 aa)
     
 
  0.407
Phatr16545
Predicted protein (167 aa)
     
 
  0.407
Phatr13445
Predicted protein (164 aa)
     
 
  0.407
Phatr11830
Predicted protein (161 aa)
     
 
  0.407
Phatr10666
Predicted protein (102 aa)
     
 
  0.407
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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