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Phatrdraft417 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatrdraft417" - Probable chorismate mutase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatrdraft417Probable chorismate mutase (288 aa)    
Predicted Functional Partners:
Phatr43429
Chorismate synthase (442 aa)
   
  0.973
Phatrdraft1682
Anthranilate synthase (927 aa)
   
 
  0.938
Phatrdraft870
Predicted protein (457 aa)
       
  0.937
Phatr51609
Predicted protein (529 aa)
       
  0.875
Phatr43277
Probable chorismate mutase (299 aa)
         
 
0.800
Phatr41702
Predicted protein (671 aa)
   
   
  0.748
Phatr3267
Predicted protein (304 aa)
     
  0.730
Phatr7664
Predicted protein (145 aa)
     
  0.730
Phatr43288
Prephenate dehydrogenase (395 aa)
     
  0.712
Phatr17238
Anthranilate synthase (958 aa)
   
   
  0.707
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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