STRINGSTRING
Phatrdraft420 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatrdraft420" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatrdraft420Predicted protein (290 aa)    
Predicted Functional Partners:
Phatr26176
Predicted protein (408 aa)
       
  0.817
Phatr28737
Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis (439 aa)
     
  0.784
EF-1
Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis (439 aa)
     
  0.784
GluRS_1
Glutamate-trna ligase (523 aa)
     
  0.733
Phatr27838
Predicted protein (1040 aa)
     
 
  0.714
Phatr34493
Predicted protein (447 aa)
     
  0.712
Phatr28694
Predicted protein (316 aa)
     
        0.647
Phatr49112
Predicted protein (494 aa)
   
 
  0.577
Phatr15121
Predicted protein (450 aa)
     
  0.557
Phatr43097
Predicted protein (671 aa)
     
  0.553
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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