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STRINGSTRING
Phatrdraft542 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatrdraft542" - Cysteine synthase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatrdraft542Cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family (336 aa)    
Predicted Functional Partners:
Phatr13476
Predicted protein (271 aa)
 
  0.962
Phatr15917
Cystathionine gamma-lyase (392 aa)
 
  0.938
Phatr49903
Predicted protein (654 aa)
   
  0.938
Phatr9538
Predicted protein (593 aa)
   
 
  0.928
Phatr18319
Adenosylhomocysteinase (481 aa)
   
 
  0.921
Phatr27240
Predicted protein (746 aa)
     
 
  0.920
Phatr49591
Predicted protein (202 aa)
       
  0.907
AAT_2
Aspartate aminotransferase (426 aa)
     
 
  0.904
AAT_1
Aspartate transaminase (435 aa)
     
 
  0.904
Phatr46040
Predicted protein (359 aa)
   
 
  0.863
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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