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STRINGSTRING
Phatrdraft552 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatrdraft552" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatrdraft552Predicted protein; Belongs to the class-I aminoacyl-tRNA synthetase family (564 aa)    
Predicted Functional Partners:
Phatr11088
Predicted protein; Belongs to the class-I aminoacyl-tRNA synthetase family (1086 aa)
     
 
  0.912
Phatr29824
Predicted protein; Belongs to the class-I aminoacyl-tRNA synthetase family (1177 aa)
   
 
  0.897
GluRS_1
Glutamate-trna ligase; Belongs to the class-I aminoacyl-tRNA synthetase family (523 aa)
   
 
  0.888
Phatr27385
Predicted protein; Belongs to the class-I aminoacyl-tRNA synthetase family (697 aa)
   
 
  0.873
Phatr16963
Glutaminyl-trna synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family (568 aa)
   
 
  0.873
Phatr51120
Predicted protein; Belongs to the class-I aminoacyl-tRNA synthetase family (777 aa)
     
 
  0.809
Phatr36013
Predicted protein; Belongs to the class-I aminoacyl-tRNA synthetase family (573 aa)
   
   
 
0.808
Phatr27323
Tyrosine--tRNA ligase (488 aa)
   
 
  0.802
Phatr42289
Lysine--tRNA ligase; Lysyl-tRNA synthetase (537 aa)
   
 
  0.793
Phatr32202
Lysine--tRNA ligase; Lysyl-tRNA synthetase (485 aa)
   
 
  0.793
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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