STRINGSTRING
Phatrdraft552 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatrdraft552" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatrdraft552Predicted protein (564 aa)    
Predicted Functional Partners:
PheRS
Phenylalanyl-trna synthetase class IIc family protein (405 aa)
   
 
  0.855
Phatr27385
Predicted protein (697 aa)
   
  0.840
Phatr16963
Glutaminyl-trna synthetase (568 aa)
   
  0.840
Phatr17198
Predicted protein (1052 aa)
   
  0.834
Phatr29824
Predicted protein (1177 aa)
   
  0.827
GluRS_2
Glutamyl-trna synthase (588 aa)
   
  0.821
GluRS_1
Glutamate-trna ligase (523 aa)
   
  0.821
Phatr8112
Predicted protein (88 aa)
   
  0.818
Phatr16545
Predicted protein (167 aa)
   
  0.818
Phatr13445
Predicted protein (164 aa)
   
  0.818
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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