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STRINGSTRING
Phatrdraft590 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatrdraft590" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatrdraft590Predicted protein (334 aa)    
Predicted Functional Partners:
Phatr28577
Predicted protein (377 aa)
     
 
  0.911
Phatr43871
Predicted protein (673 aa)
     
 
  0.830
Phatr16932
Predicted protein (361 aa)
     
 
  0.785
Phatr24362
Predicted protein (328 aa)
     
 
  0.737
RabGDI
Rab GDP dissociation inhibitor; Belongs to the Rab GDI family (446 aa)
     
 
  0.699
Phatr9832
Protein-S-isoprenylcysteine O-methyltransferase (187 aa)
     
   
  0.575
Rab18
Predicted protein (213 aa)
       
 
  0.485
Rab1b
Predicted protein (208 aa)
       
 
  0.485
Rab1a
Predicted protein (203 aa)
       
 
  0.485
AP3mu
Predicted protein; Belongs to the adaptor complexes medium subunit family (416 aa)
     
   
  0.429
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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