STRINGSTRING
Phatrdraft598 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatrdraft598" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatrdraft598Predicted protein (313 aa)    
Predicted Functional Partners:
Phatr27240
Predicted protein (746 aa)
       
  0.666
Phatr34800
Predicted protein (387 aa)
   
  0.583
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase (614 aa)
   
 
  0.566
Phatr49777
Predicted protein (418 aa)
 
   
  0.556
Phatr44546
Predicted protein (316 aa)
 
   
  0.546
Phatrdraft1619
Predicted protein (515 aa)
   
          0.526
Phatr54983
Predicted protein; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (891 aa)
     
   
  0.523
ACC2
Biotin carboxylase (2282 aa)
   
 
  0.478
Phatr22418
Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide (566 aa)
   
   
  0.475
GltX
Ferredoxin-dependent glutamate synthase, fusion of large and small subunits (1591 aa)
         
  0.468
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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