STRINGSTRING
Phatrdraft706 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatrdraft706" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatrdraft706Predicted protein (244 aa)    
Predicted Functional Partners:
Phatr45122
Predicted protein (421 aa)
     
  0.982
Phatr30067
Predicted protein (403 aa)
     
  0.969
Phatr9090
Predicted protein (431 aa)
     
  0.969
RPN3
Regulatory proteasome non-atpase subunit 3 (323 aa)
     
  0.962
Phatr11735
Predicted protein (389 aa)
       
  0.962
RPN6
Regulatory proteasome non-atpase subunit 6 (405 aa)
     
  0.962
RPN5
Regulatory proteasome non-atpase subunit 5 (457 aa)
       
  0.960
RPN2
Regulatory proteasome non-atpase subunit 2 (1008 aa)
       
  0.820
Phatr28219
Predicted protein (447 aa)
     
  0.780
Phatr41778
Predicted protein (284 aa)
       
  0.764
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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