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STRINGSTRING
Phatrdraft748 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatrdraft748" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatrdraft748Predicted protein (723 aa)    
Predicted Functional Partners:
Phatr46292
Predicted protein (772 aa)
       
 
  0.817
Phatr18008
Ubiquitinyl hydrolase 1; Ubiquitin carboxyl-terminal hydrolase (844 aa)
           
  0.670
Phatr18319
Adenosylhomocysteinase (481 aa)
           
  0.573
Phatrdraft1763
Predicted protein; Belongs to the peptidase C19 family (810 aa)
     
   
  0.498
Phatr31584
Predicted protein; Belongs to the peptidase C19 family (618 aa)
     
   
  0.410
Phatr8918
Predicted protein (190 aa)
     
   
  0.400
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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