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Phatrdraft870 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatrdraft870" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatrdraft870Predicted protein (457 aa)    
Predicted Functional Partners:
Phatrdraft417
Probable chorismate mutase (288 aa)
       
  0.937
Phatr43277
Probable chorismate mutase (299 aa)
       
  0.937
Phatr13175
Predicted protein (391 aa)
         
  0.903
Phatr22113
Bifunctional aspartokinase (870 aa)
   
  0.902
TYR1
Tyrosinase (546 aa)
         
    0.900
GltX
Ferredoxin-dependent glutamate synthase, fusion of large and small subunits (1591 aa)
   
  0.887
Phatr24739
Predicted protein (1594 aa)
   
  0.887
AAT_2
Aspartate aminotransferase (426 aa)
   
  0.871
AAT_1
Aspartate transaminase (435 aa)
   
  0.871
Phatr38891
Predicted protein (373 aa)
       
  0.857
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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