STRINGSTRING
Phatrdraft877 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatrdraft877" - L-serine ammonia-lyase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatrdraft877L-serine ammonia-lyase (340 aa)    
Predicted Functional Partners:
Phatr37341
Annotation not available (628 aa)
   
  0.968
Phatr49056
Predicted protein (504 aa)
   
  0.953
Phatr41702
Predicted protein (671 aa)
   
 
  0.951
Phatr8717
Serine hydroxymethyltransferase; Interconversion of serine and glycine (464 aa)
     
 
  0.929
SHMT2
Serine hydroxymethyltransferase; Interconversion of serine and glycine (501 aa)
     
 
  0.929
SHMT
Serine hydroxymethyltransferase; Interconversion of serine and glycine (473 aa)
     
 
  0.929
Phatr22113
Bifunctional aspartokinase (870 aa)
   
  0.924
Phatr13987
Predicted protein (347 aa)
   
   
 
0.916
Phatr49372
Predicted protein (400 aa)
   
 
  0.915
Phatr13476
Predicted protein (271 aa)
       
  0.911
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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