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Phatrdraft913 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatrdraft913" - S-adenosylmethionine synthase in Phaeodactylum tricornutum
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatrdraft913S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP (386 aa)    
Predicted Functional Partners:
METH
Methionine synthase (1245 aa)
   
 
  0.985
Phatr51609
Predicted protein (529 aa)
   
 
  0.941
Phatr18319
Adenosylhomocysteinase (481 aa)
   
   
  0.921
Phatr3362
Predicted protein (322 aa)
         
  0.906
Phatr12330
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (159 aa)
            0.809
PHATR_3140
Predicted protein (196 aa)
     
 
  0.789
Phatr28056
Predicted protein (757 aa)
   
  0.761
Phatr27838
Predicted protein (1040 aa)
     
      0.749
Phatr30471
Methylenetetrahydrofolate reductase (376 aa)
   
 
  0.744
Phatr28431
Methylenetetrahydrofolate reductase (634 aa)
   
 
  0.744
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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