• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Phatrdraft913 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatrdraft913" - S-adenosylmethionine synthase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatrdraft913S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP (386 aa)    
Predicted Functional Partners:
Phatr18319
Adenosylhomocysteinase (481 aa)
   
   
  0.991
Phatr3362
Predicted protein (322 aa)
     
 
  0.979
Phatr28056
Predicted protein (757 aa)
   
 
  0.974
METH
Methionine synthase (1245 aa)
   
 
  0.963
TPI/GapC3
Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family (614 aa)
   
   
  0.932
Phatr51609
Predicted protein (529 aa)
   
 
  0.928
Phatr12330
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (159 aa)
       
  0.888
Phatr19901
Predicted protein (900 aa)
   
   
  0.827
Phatr51242
Predicted protein (342 aa)
   
   
  0.826
Phatr31147
Probable methylthioribulose-1-phosphate dehydratase; Catalyzes the dehydration of methylthioribulose-1- phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1- phosphate (DK-MTP-1-P) (559 aa)
         
  0.819
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
Server load: low (9%) [HD]