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STRINGSTRING
Phatrdraft920 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatrdraft920" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatrdraft920Predicted protein; Belongs to the DEAD box helicase family (575 aa)    
Predicted Functional Partners:
Phatr17862
Predicted protein; Belongs to the DEAD box helicase family (529 aa)
   
   
 
0.809
Phatr25549
Predicted protein (512 aa)
   
 
0.642
Phatr23865
Predicted protein (720 aa)
     
 
  0.597
Phatr19552
Predicted protein (529 aa)
   
 
  0.597
Phatr18579
Predicted protein (510 aa)
   
 
  0.578
Phatr14161
Helicase_3 (540 aa)
   
 
0.574
Phatr14145
Predicted protein (516 aa)
     
 
  0.566
Phatr48920
Predicted protein (317 aa)
 
 
 
  0.564
Phatr44394
Predicted protein (668 aa)
     
 
  0.561
Phatr36743
Predicted protein (149 aa)
     
 
  0.554
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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