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Phatrdraft955 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatrdraft955" - DNA-directed RNA polymerase in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatrdraft955DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1674 aa)    
Predicted Functional Partners:
Phatr9235
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1147 aa)
 
  0.999
RNAP-II_2
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1211 aa)
 
  0.996
Phatr11441
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1212 aa)
   
  0.995
Phatr19552
Predicted protein (529 aa)
     
  0.992
RNAP-II_1
Predicted protein (319 aa)
   
  0.991
Phatr25420
Predicted protein (228 aa)
   
  0.988
Phatr10310
Predicted protein (85 aa)
     
  0.985
Phatr12779
Predicted protein (89 aa)
   
  0.984
Phatr10148
Predicted protein (129 aa)
   
  0.982
Phatr22597
Predicted protein (149 aa)
     
  0.982
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: Bacillariophyceae, Bacillariophycidae, Naviculales, P. tricornutum, Phaeodactylaceae, Phaeodactylum, Phaeodactylum tricornutum, Raphid, pennate diatoms
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