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STRINGSTRING
Phatrdraft977 protein (Phaeodactylum tricornutum) - STRING interaction network
"Phatrdraft977" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Phatrdraft977Predicted protein (334 aa)    
Predicted Functional Partners:
Phatr26176
Predicted protein (408 aa)
     
   
  0.988
rpl2
Predicted protein (257 aa)
 
 
  0.980
Phatr31919
Predicted protein (305 aa)
 
 
  0.975
Phatr19025
Predicted protein (205 aa)
 
 
  0.973
Phatr17324
40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family (261 aa)
   
 
  0.972
Phatr13361
Predicted protein; Belongs to the universal ribosomal protein uL3 family (389 aa)
 
 
  0.972
Phatr30262
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family (192 aa)
   
 
  0.972
Phatr17545
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family (261 aa)
   
 
  0.971
Phatr33660
Predicted protein (253 aa)
 
 
  0.971
Phatr48411
Predicted protein; Belongs to the universal ribosomal protein uS5 family (264 aa)
 
 
  0.968
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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