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STRINGSTRING
PtRabX1 protein (Phaeodactylum tricornutum) - STRING interaction network
"PtRabX1" - Predicted protein in Phaeodactylum tricornutum
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PtRabX1Predicted protein (230 aa)    
Predicted Functional Partners:
RabGDI
Rab GDP dissociation inhibitor; Belongs to the Rab GDI family (446 aa)
     
 
  0.826
Phatr28577
Predicted protein (377 aa)
     
 
  0.677
Phatr42505
Predicted protein (1198 aa)
     
 
  0.652
Phatr47327
Predicted protein (786 aa)
     
 
  0.644
Arf1
Predicted protein; Belongs to the small GTPase superfamily. Arf family (184 aa)
     
 
  0.633
Phatr43641
Predicted protein (617 aa)
     
 
  0.624
UNC18
Predicted protein; Belongs to the STXBP/unc-18/SEC1 family (588 aa)
     
 
  0.610
Phatr51280
Signal peptidase I (185 aa)
     
   
  0.578
Phatr573
Predicted protein (665 aa)
     
 
  0.554
Phatr44344
Predicted protein (980 aa)
     
 
  0.554
Your Current Organism:
Phaeodactylum tricornutum
NCBI taxonomy Id: 2850
Other names: P. tricornutum, Phaeodactylum tricornutum
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