STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL00043.1Diguanylate cyclase. (352 aa)    
Predicted Functional Partners:
SFK34857.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 
 0.986
SFK57792.1
Two-component system, chemotaxis family, sensor kinase CheA.
 
 
 0.974
SFK25964.1
Two-component system, sensor histidine kinase RpfC.
 0.970
SFK81689.1
Hpt sensor hybrid histidine kinase.
 0.969
SFK25978.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
0.953
SFJ94163.1
PAS domain S-box-containing protein.
 0.949
SFK63017.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
 
 0.933
SFK10026.1
Two-component system, OmpR family, phosphate regulon response regulator PhoB.
 
 
 0.922
SFK79010.1
Two-component system, cell cycle sensor histidine kinase and response regulator CckA.
 
 0.911
SFK13652.1
cyclic-di-GMP phosphodiesterase, flagellum assembly factor TipF.
 
 
 0.905
Your Current Organism:
Pseudovibrio ascidiaceicola
NCBI taxonomy Id: 285279
Other names: DSM 16392, IAM 15084, JCM 21545, KCTC 12308, NBRC 100514, P. ascidiaceicola, Pseudovibrio ascidiaceicola Fukunaga et al. 2006, Pseudovibrio sp. F423, strain F423
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