STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g04079Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (480 aa)    
Predicted Functional Partners:
SeMB42_g00203
Uncharacterized protein.
    
 
 0.633
MDE1
Methylthioribulose-1-phosphate dehydratase; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P).
    
 
 0.591
SeMB42_g07723
Uncharacterized protein.
   
 
 0.588
SeMB42_g00285
Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.
   
 
 0.517
SeMB42_g02619
3'-5' exonuclease domain-containing protein.
    
 
 0.476
SeMB42_g01235
3'-5' exonuclease domain-containing protein.
    
 
 0.476
SeMB42_g00483
3'-5' exonuclease domain-containing protein.
    
 
 0.476
SeMB42_g03699
Uncharacterized protein.
   
   0.433
SeMB42_g03145
SAS-6_N domain-containing protein.
   
   0.422
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.