Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CsuD | pfeA | DR97_1961 | DR97_5271 | annotation not available | Tonb-dependent siderophore receptor family protein; Specific receptor for the siderophore ferric enterobactin | 0.575 |
CsuD | pirA | DR97_1961 | DR97_1008 | annotation not available | Ferric enterobactin receptor; tonB-siderophor: TonB-dependent siderophore receptor family protein | 0.727 |
DR97_5270 | DR97_5945 | DR97_5270 | DR97_5945 | annotation not available | annotation not available | 0.709 |
DR97_5270 | foxA | DR97_5270 | DR97_5708 | annotation not available | Ferrioxamine receptor FoxA; tonB-siderophor: TonB-dependent siderophore receptor family protein | 0.503 |
DR97_5270 | pchD | DR97_5270 | DR97_3683 | annotation not available | annotation not available | 0.739 |
DR97_5270 | pfeA | DR97_5270 | DR97_5271 | annotation not available | Tonb-dependent siderophore receptor family protein; Specific receptor for the siderophore ferric enterobactin | 0.971 |
DR97_5270 | phzD1 | DR97_5270 | DR97_3698 | annotation not available | Trans-2,3-dihydro-3-hydroxyanthranilic acid synthase; Involved in the biosynthesis of the antibiotic phenazine, a nitrogen-containing heterocyclic molecule. PhzD1 (operon phzA1B1C1E1F1G1) has a role in the biosynthesis of the phenazine during planktonic growth . Catalyzes the hydrolysis of the vinyl ether functional group of 2-amino-2-deoxyisochorismate (ADIC), yielding pyruvate and trans-2,3-dihydro-3-hydroxyanthranilic acid (DHHA) . Also able to act on isochorismate, chorismate and 4-amino-4-deoxychorismate (ADC) as substrates | 0.709 |
DR97_5270 | pirA | DR97_5270 | DR97_1008 | annotation not available | Ferric enterobactin receptor; tonB-siderophor: TonB-dependent siderophore receptor family protein | 0.850 |
DR97_5945 | DR97_5270 | DR97_5945 | DR97_5270 | annotation not available | annotation not available | 0.709 |
DR97_5945 | pchD | DR97_5945 | DR97_3683 | annotation not available | annotation not available | 0.994 |
DR97_5945 | pfeA | DR97_5945 | DR97_5271 | annotation not available | Tonb-dependent siderophore receptor family protein; Specific receptor for the siderophore ferric enterobactin | 0.733 |
DR97_5945 | phzD1 | DR97_5945 | DR97_3698 | annotation not available | Trans-2,3-dihydro-3-hydroxyanthranilic acid synthase; Involved in the biosynthesis of the antibiotic phenazine, a nitrogen-containing heterocyclic molecule. PhzD1 (operon phzA1B1C1E1F1G1) has a role in the biosynthesis of the phenazine during planktonic growth . Catalyzes the hydrolysis of the vinyl ether functional group of 2-amino-2-deoxyisochorismate (ADIC), yielding pyruvate and trans-2,3-dihydro-3-hydroxyanthranilic acid (DHHA) . Also able to act on isochorismate, chorismate and 4-amino-4-deoxychorismate (ADC) as substrates | 0.948 |
DR97_5945 | pirA | DR97_5945 | DR97_1008 | annotation not available | Ferric enterobactin receptor; tonB-siderophor: TonB-dependent siderophore receptor family protein | 0.728 |
OpmG | imm1 | DR97_2525 | DR97_783 | Uncharacterized protein; outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein | pyocin-S1 immunity protein; Belongs to the colicins ColE2/ColE8/ColE9 and pyocins S1/S2 family | 0.853 |
OpmG | pfeA | DR97_2525 | DR97_5271 | Uncharacterized protein; outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein | Tonb-dependent siderophore receptor family protein; Specific receptor for the siderophore ferric enterobactin | 0.658 |
OpmG | pirA | DR97_2525 | DR97_1008 | Uncharacterized protein; outer_NodT: efflux transporter, outer membrane factor (OMF) lipo, NodT family protein | Ferric enterobactin receptor; tonB-siderophor: TonB-dependent siderophore receptor family protein | 0.858 |
cntO | pchD | DR97_2187 | DR97_3683 | Tonb-dependent siderophore receptor family protein; Transports the metallophore pseudopaline, which is involved in the acquisition of nickel and zinc, and thus enables bacterial growth inside the host, where metal access is limited. Is probably involved in the import of pseudopaline-metal complexes | annotation not available | 0.400 |
cntO | pfeA | DR97_2187 | DR97_5271 | Tonb-dependent siderophore receptor family protein; Transports the metallophore pseudopaline, which is involved in the acquisition of nickel and zinc, and thus enables bacterial growth inside the host, where metal access is limited. Is probably involved in the import of pseudopaline-metal complexes | Tonb-dependent siderophore receptor family protein; Specific receptor for the siderophore ferric enterobactin | 0.419 |
cntO | pirA | DR97_2187 | DR97_1008 | Tonb-dependent siderophore receptor family protein; Transports the metallophore pseudopaline, which is involved in the acquisition of nickel and zinc, and thus enables bacterial growth inside the host, where metal access is limited. Is probably involved in the import of pseudopaline-metal complexes | Ferric enterobactin receptor; tonB-siderophor: TonB-dependent siderophore receptor family protein | 0.883 |
foxA | DR97_5270 | DR97_5708 | DR97_5270 | Ferrioxamine receptor FoxA; tonB-siderophor: TonB-dependent siderophore receptor family protein | annotation not available | 0.503 |
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