STRINGSTRING
pfeR1 protein (Pseudomonas aeruginosa) - STRING interaction network
"pfeR1" - Transcriptional regulatory , C terminal family protein in Pseudomonas aeruginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pfeR1Transcriptional regulatory , C terminal family protein (239 aa)    
Predicted Functional Partners:
pfeS1
annotation not available (446 aa)
  0.994
pfeS3
annotation not available (446 aa)
    0.973
gacS
annotation not available (925 aa)
 
 
0.940
fecI_13
sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein (169 aa)
     
   
  0.886
piuC
annotation not available (226 aa)
     
   
  0.873
pfeR3
Transcriptional regulatory , C terminal family protein (238 aa)
   
 
 
0.866
DR97_3759
annotation not available (1417 aa)
 
 
  0.856
DR97_4892
annotation not available (741 aa)
 
  0.772
DR97_2335
annotation not available (743 aa)
 
  0.770
bvgS
annotation not available (1212 aa)
 
 
  0.769
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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