STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR97_1066Bacterial regulatory helix-turn-helix , lysr family protein; Belongs to the LysR transcriptional regulatory family (298 aa)    
Predicted Functional Partners:
DR97_1065
Itaconyl-coa hydratase / mesaconyl-c4 coa hydratase; N-terminal half of MaoC dehydratase family protein
 
     0.886
DR97_1062
annotation not available
 
     0.870
DR97_1064
acyl-CoA dehydrogenase, N-terminal domain protein
 
     0.813
DR97_1060
Hpch/hpai aldolase/citrate lyase family protein; Belongs to the HpcH/HpaI aldolase family
 
 
   0.759
DR97_1061
Coa-transferase iii family protein; Belongs to the CoA-transferase III family
 
     0.732
DR97_3240
annotation not available
 
    0.572
DR97_2440
Bacterial regulatory helix-turn-helix , lysr family protein; Belongs to the LysR transcriptional regulatory family
  
     0.560
DR97_1063
Ring-cleaving dioxygenase; Virulence protein STM3117
       0.494
DR97_5011
Bacterial regulatory helix-turn-helix , lysr family protein; Belongs to the LysR transcriptional regulatory family
  
     0.490
DR97_2805
Lysr family transcriptional regulator, hypochlorite-specific transcription factor hypt; Belongs to the LysR transcriptional regulatory family
  
    0.481
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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