oruR protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

oruR

annotation not available (339 aa)

Predicted Functional Partners:

DR97_1114

0.790

ycbL

0.619

pvcA

0.550

drrA

0.550

gltP

0.476

colS

0.474

DR97_394

0.463

proB

0.440

uvrC

0.433

dsbD2

0.431

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_1114	oruR	DR97_1114	DR97_1113	annotation not available	annotation not available	0.790
DR97_1114	ycbL	DR97_1114	DR97_1112	annotation not available	annotation not available	0.426
DR97_394	oruR	DR97_394	DR97_1113	annotation not available	annotation not available	0.463
colS	oruR	DR97_1557	DR97_1113	annotation not available	annotation not available	0.474
drrA	oruR	DR97_5131	DR97_1113	annotation not available	annotation not available	0.550
dsbD2	oruR	DR97_5696	DR97_1113	Thiol-disulfide interchange protein DsbD; Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps	annotation not available	0.431
gltP	oruR	DR97_2858	DR97_1113	Probable proton/glutamate-aspartate symporter; Catalyzes the proton-dependent transport of glutamate and aspartate	annotation not available	0.476
oruR	DR97_1114	DR97_1113	DR97_1114	annotation not available	annotation not available	0.790
oruR	DR97_394	DR97_1113	DR97_394	annotation not available	annotation not available	0.463
oruR	colS	DR97_1113	DR97_1557	annotation not available	annotation not available	0.474
oruR	drrA	DR97_1113	DR97_5131	annotation not available	annotation not available	0.550
oruR	dsbD2	DR97_1113	DR97_5696	annotation not available	Thiol-disulfide interchange protein DsbD; Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a cascade of disulfide bond formation and reduction steps	0.431
oruR	gltP	DR97_1113	DR97_2858	annotation not available	Probable proton/glutamate-aspartate symporter; Catalyzes the proton-dependent transport of glutamate and aspartate	0.476
oruR	proB	DR97_1113	DR97_1869	annotation not available	Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate	0.440
oruR	pvcA	DR97_1113	DR97_6296	annotation not available	annotation not available	0.550
oruR	uvrC	DR97_1113	DR97_5460	annotation not available	UvrABC system protein C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5’ and 3’ sides of the lesion. The N-terminal half is responsible for the 3’ incision and the C-terminal half is responsible for the 5’ incision	0.433
oruR	ycbL	DR97_1113	DR97_1112	annotation not available	annotation not available	0.619
proB	oruR	DR97_1869	DR97_1113	Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate	annotation not available	0.440
pvcA	oruR	DR97_6296	DR97_1113	annotation not available	annotation not available	0.550
uvrC	oruR	DR97_5460	DR97_1113	UvrABC system protein C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5’ and 3’ sides of the lesion. The N-terminal half is responsible for the 3’ incision and the C-terminal half is responsible for the 5’ incision	annotation not available	0.433

page 1 of 2

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2019

Credits

Access

Info

About