DR97_1250 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DR97_1250

Uncharacterized protein (358 aa)

Predicted Functional Partners:

DR97_1251

0.968

DR97_2019

0.741

PACL_0513

0.682

DR97_1389

0.679

rsuA

0.616

DR97_1252

0.616

DR97_4706

0.596

DR97_121

0.587

DR97_1727

0.556

DR97_4136

0.549

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_121	DR97_1250	DR97_121	DR97_1250	annotation not available	Uncharacterized protein	0.587
DR97_121	DR97_1389	DR97_121	DR97_1389	annotation not available	Uncharacterized protein	0.495
DR97_121	DR97_2019	DR97_121	DR97_2019	annotation not available	Uncharacterized protein	0.697
DR97_121	DR97_4136	DR97_121	DR97_4136	annotation not available	annotation not available	0.782
DR97_121	DR97_4706	DR97_121	DR97_4706	annotation not available	DUF2790 domain-containing protein	0.591
DR97_121	PACL_0513	DR97_121	DR97_1995	annotation not available	Uncharacterized protein	0.501
DR97_1250	DR97_121	DR97_1250	DR97_121	Uncharacterized protein	annotation not available	0.587
DR97_1250	DR97_1251	DR97_1250	DR97_1251	Uncharacterized protein	DUF4824 domain-containing protein	0.968
DR97_1250	DR97_1252	DR97_1250	DR97_1252	Uncharacterized protein	annotation not available	0.616
DR97_1250	DR97_1389	DR97_1250	DR97_1389	Uncharacterized protein	Uncharacterized protein	0.679
DR97_1250	DR97_1727	DR97_1250	DR97_1727	Uncharacterized protein	annotation not available	0.556
DR97_1250	DR97_2019	DR97_1250	DR97_2019	Uncharacterized protein	Uncharacterized protein	0.741
DR97_1250	DR97_4136	DR97_1250	DR97_4136	Uncharacterized protein	annotation not available	0.549
DR97_1250	DR97_4706	DR97_1250	DR97_4706	Uncharacterized protein	DUF2790 domain-containing protein	0.596
DR97_1250	PACL_0513	DR97_1250	DR97_1995	Uncharacterized protein	Uncharacterized protein	0.682
DR97_1250	rsuA	DR97_1250	DR97_1253	Uncharacterized protein	annotation not available	0.616
DR97_1251	DR97_1250	DR97_1251	DR97_1250	DUF4824 domain-containing protein	Uncharacterized protein	0.968
DR97_1251	DR97_1252	DR97_1251	DR97_1252	DUF4824 domain-containing protein	annotation not available	0.616
DR97_1251	rsuA	DR97_1251	DR97_1253	DUF4824 domain-containing protein	annotation not available	0.616
DR97_1252	DR97_1250	DR97_1252	DR97_1250	annotation not available	Uncharacterized protein	0.616

page 1 of 3

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About