phaG protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

phaG

annotation not available (300 aa)

Predicted Functional Partners:

phaA

0.854

phaC2

0.780

DR97_52

0.754

DR97_1716

0.684

DR97_2711

0.654

phaI

0.652

phaZ

0.635

DR97_2415

0.626

DR97_2880

0.618

DR97_6048

0.605

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_1716	DR97_2415	DR97_1716	DR97_2415	Uncharacterized protein	Polyhydroxyalkanoate synthesis protein PhaF; PHA_granule_1- poly(hydroxyalkanoate) granule-associated domain protein	0.683
DR97_1716	DR97_2711	DR97_1716	DR97_2711	Uncharacterized protein	annotation not available	0.778
DR97_1716	DR97_2880	DR97_1716	DR97_2880	Uncharacterized protein	annotation not available	0.773
DR97_1716	DR97_6048	DR97_1716	DR97_6048	Uncharacterized protein	annotation not available	0.737
DR97_1716	phaG	DR97_1716	DR97_1256	Uncharacterized protein	annotation not available	0.684
DR97_1716	phaI	DR97_1716	DR97_2416	Uncharacterized protein	PHA_granule_1- poly(hydroxyalkanoate) granule-associated domain protein	0.416
DR97_2415	DR97_1716	DR97_2415	DR97_1716	Polyhydroxyalkanoate synthesis protein PhaF; PHA_granule_1- poly(hydroxyalkanoate) granule-associated domain protein	Uncharacterized protein	0.683
DR97_2415	DR97_2711	DR97_2415	DR97_2711	Polyhydroxyalkanoate synthesis protein PhaF; PHA_granule_1- poly(hydroxyalkanoate) granule-associated domain protein	annotation not available	0.623
DR97_2415	DR97_2880	DR97_2415	DR97_2880	Polyhydroxyalkanoate synthesis protein PhaF; PHA_granule_1- poly(hydroxyalkanoate) granule-associated domain protein	annotation not available	0.690
DR97_2415	DR97_6048	DR97_2415	DR97_6048	Polyhydroxyalkanoate synthesis protein PhaF; PHA_granule_1- poly(hydroxyalkanoate) granule-associated domain protein	annotation not available	0.644
DR97_2415	phaC2	DR97_2415	DR97_2413	Polyhydroxyalkanoate synthesis protein PhaF; PHA_granule_1- poly(hydroxyalkanoate) granule-associated domain protein	Poly(3-hydroxyalkanoate) polymerase 2; PHA_synth_II- poly(R)-hydroxyalkanoic acid synthase, class II family protein	0.526
DR97_2415	phaG	DR97_2415	DR97_1256	Polyhydroxyalkanoate synthesis protein PhaF; PHA_granule_1- poly(hydroxyalkanoate) granule-associated domain protein	annotation not available	0.626
DR97_2415	phaI	DR97_2415	DR97_2416	Polyhydroxyalkanoate synthesis protein PhaF; PHA_granule_1- poly(hydroxyalkanoate) granule-associated domain protein	PHA_granule_1- poly(hydroxyalkanoate) granule-associated domain protein	0.899
DR97_2415	phaZ	DR97_2415	DR97_2412	Polyhydroxyalkanoate synthesis protein PhaF; PHA_granule_1- poly(hydroxyalkanoate) granule-associated domain protein	PHA_depoly_arom- poly(3-hydroxyalkanoate) depolymerase	0.444
DR97_2711	DR97_1716	DR97_2711	DR97_1716	annotation not available	Uncharacterized protein	0.778
DR97_2711	DR97_2415	DR97_2711	DR97_2415	annotation not available	Polyhydroxyalkanoate synthesis protein PhaF; PHA_granule_1- poly(hydroxyalkanoate) granule-associated domain protein	0.623
DR97_2711	DR97_2880	DR97_2711	DR97_2880	annotation not available	annotation not available	0.705
DR97_2711	DR97_6048	DR97_2711	DR97_6048	annotation not available	annotation not available	0.770
DR97_2711	phaG	DR97_2711	DR97_1256	annotation not available	annotation not available	0.654
DR97_2880	DR97_1716	DR97_2880	DR97_1716	annotation not available	Uncharacterized protein	0.773

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