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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR97_1261Uncharacterized protein; ICE_TraI_Pfluor: integrating conjugative element relaxase, PFGI-1 class (616 aa)    
Predicted Functional Partners:
TraG
Conjugal transfer protein; Uncharacterized protein
 
   
 0.965
DR97_1290
Uncharacterized protein; conj_TOL_TraD: conjugative coupling factor TraD, PFGI-1 class
 
   
 0.962
DR97_5542
Uncharacterized protein; conj_TOL_TraD: conjugative coupling factor TraD, PFGI-1 class
 
   
 0.962
DR97_1793
TraG/TraD family protein; conj_TOL_TraD: conjugative coupling factor TraD, PFGI-1 class
 
   
 0.953
DR97_1308
topB: DNA topoisomerase III family protein
 
   
 0.867
DR97_5572
topB: DNA topoisomerase III family protein
 
   
 0.849
lasI
Acyl homoserine lactone synthase; Required for the synthesis of PAI consisting of 3-oxo-N- (tetrahydro-2-oxo-3-furanyl)-dodecanamide also known as N-(3- oxododecanoyl)homoserine lactone, an autoinducer molecule which binds to LasR and thus acts in elastase biosynthesis regulation
      
 0.845
trbG
trbG_Ti: P-type conjugative transfer protein TrbG
      
 0.843
DR97_1264
Conserved hypothetical protein
 
     0.821
DR97_5574
Hypothetical protein; Uncharacterized protein ORF C103
  
   
 0.818
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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