STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DR97_1308topB: DNA topoisomerase III family protein (671 aa)    
Predicted Functional Partners:
DR97_5522
annotation not available
 
   
 0.889
RadC
Dna repair radc family protein; Belongs to the UPF0758 family
 
   
 0.882
DR97_1261
Uncharacterized protein; ICE_TraI_Pfluor: integrating conjugative element relaxase, PFGI-1 class
 
   
 0.867
DR97_5513
Relaxase; ICE_TraI_Pfluor: integrating conjugative element relaxase, PFGI-1 class
 
   
 0.866
recQ
recQ: ATP-dependent DNA helicase RecQ
 
 0.857
DR97_5574
Hypothetical protein; Uncharacterized protein ORF C103
 
   
 0.856
DR97_1310
annotation not available
 
 
 0.843
DR97_1840
Relaxase; ICE_TraI_Pfluor: integrating conjugative element relaxase, PFGI-1 class
 
   
 0.801
polA
In addition to polymerase activity, this DNA polymerase exhibits 3'-5' and 5'-3' exonuclease activity
  
 0.791
DR97_1311
Hypothetical protein; Uncharacterized protein
 
   
 0.786
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.