hxcR protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

hxcR

Involved in a type II secretion system (T2SS) for the export of proteins. Probably required for the translocation of a variety of proteins across the outer membrane (469 aa)

Predicted Functional Partners:

HxcS

0.998

HxcT

0.998

HxcQ

0.994

xcpS

0.993

HplT

0.989

xcpT

0.987

HxcV

0.977

HxcY

0.966

xcpV

0.965

HxcU

0.962

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HplT	HxcQ	DR97_5285	DR97_1434	typeII_sec_gspG: type II secretion system protein G	type_II_gspD: type II secretion system protein D	0.930
HplT	HxcS	DR97_5285	DR97_1432	typeII_sec_gspG: type II secretion system protein G	General secretion pathway protein f; gspF: type II secretion system protein F	0.982
HplT	HxcT	DR97_5285	DR97_1438	typeII_sec_gspG: type II secretion system protein G	General secretion pathway protein g; typeII_sec_gspG: type II secretion system protein G	0.830
HplT	HxcU	DR97_5285	DR97_1441	typeII_sec_gspG: type II secretion system protein G	General secretion pathway protein h; typeII_sec_gspH: type II secretion system protein H	0.896
HplT	HxcV	DR97_5285	DR97_1439	typeII_sec_gspG: type II secretion system protein G	General secretion pathway protein i; gspI: type II secretion system protein I	0.893
HplT	hxcR	DR97_5285	DR97_1433	typeII_sec_gspG: type II secretion system protein G	Involved in a type II secretion system (T2SS) for the export of proteins. Probably required for the translocation of a variety of proteins across the outer membrane	0.989
HplT	xcpS	DR97_5285	DR97_4831	typeII_sec_gspG: type II secretion system protein G	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. Required for the translocation of a variety of enzymes across the outer membrane	0.984
HplT	xcpT	DR97_5285	DR97_4832	typeII_sec_gspG: type II secretion system protein G	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. Required for the translocation of a variety of enzymes across the outer membrane	0.824
HplT	xcpV	DR97_5285	DR97_4834	typeII_sec_gspG: type II secretion system protein G	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins (By similarity). Required for the translocation of a variety of enzymes across the outer membrane	0.980
HxcQ	HplT	DR97_1434	DR97_5285	type_II_gspD: type II secretion system protein D	typeII_sec_gspG: type II secretion system protein G	0.930
HxcQ	HxcS	DR97_1434	DR97_1432	type_II_gspD: type II secretion system protein D	General secretion pathway protein f; gspF: type II secretion system protein F	0.989
HxcQ	HxcT	DR97_1434	DR97_1438	type_II_gspD: type II secretion system protein D	General secretion pathway protein g; typeII_sec_gspG: type II secretion system protein G	0.989
HxcQ	HxcU	DR97_1434	DR97_1441	type_II_gspD: type II secretion system protein D	General secretion pathway protein h; typeII_sec_gspH: type II secretion system protein H	0.902
HxcQ	HxcV	DR97_1434	DR97_1439	type_II_gspD: type II secretion system protein D	General secretion pathway protein i; gspI: type II secretion system protein I	0.944
HxcQ	HxcY	DR97_1434	DR97_1436	type_II_gspD: type II secretion system protein D	annotation not available	0.969
HxcQ	hxcR	DR97_1434	DR97_1433	type_II_gspD: type II secretion system protein D	Involved in a type II secretion system (T2SS) for the export of proteins. Probably required for the translocation of a variety of proteins across the outer membrane	0.994
HxcQ	xcpS	DR97_1434	DR97_4831	type_II_gspD: type II secretion system protein D	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. Required for the translocation of a variety of enzymes across the outer membrane	0.920
HxcQ	xcpT	DR97_1434	DR97_4832	type_II_gspD: type II secretion system protein D	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. Required for the translocation of a variety of enzymes across the outer membrane	0.925
HxcQ	xcpV	DR97_1434	DR97_4834	type_II_gspD: type II secretion system protein D	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins (By similarity). Required for the translocation of a variety of enzymes across the outer membrane	0.825
HxcS	HplT	DR97_1432	DR97_5285	General secretion pathway protein f; gspF: type II secretion system protein F	typeII_sec_gspG: type II secretion system protein G	0.982

page 1 of 6

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2021

Credits

Access

Info

About