vreR protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

vreR

annotation not available (319 aa)

Predicted Functional Partners:

vreI

0.995

vreA

0.994

pvdS

0.869

DR97_431

0.827

DR97_5796

0.825

foxI

0.824

fiuI

0.823

fecI_13

0.822

DR97_2247

0.822

femI

0.821

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_2247	DR97_431	DR97_2247	DR97_431	sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	Uncharacterized protein; sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	0.493
DR97_2247	foxI	DR97_2247	DR97_5706	sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	annotation not available	0.400
DR97_2247	pvdS	DR97_2247	DR97_6007	sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	Uncharacterized protein; sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	0.511
DR97_2247	vreI	DR97_2247	DR97_1444	sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	0.687
DR97_2247	vreR	DR97_2247	DR97_1443	sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	annotation not available	0.822
DR97_431	DR97_2247	DR97_431	DR97_2247	Uncharacterized protein; sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	0.493
DR97_431	DR97_5796	DR97_431	DR97_5796	Uncharacterized protein; sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	Uncharacterized protein; sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	0.764
DR97_431	vreA	DR97_431	DR97_1445	Uncharacterized protein; sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	VreA; Secretin and TonB N terminus short domain protein	0.402
DR97_431	vreR	DR97_431	DR97_1443	Uncharacterized protein; sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	annotation not available	0.827
DR97_5796	DR97_431	DR97_5796	DR97_431	Uncharacterized protein; sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	Uncharacterized protein; sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	0.764
DR97_5796	pvdS	DR97_5796	DR97_6007	Uncharacterized protein; sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	Uncharacterized protein; sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	0.760
DR97_5796	vreI	DR97_5796	DR97_1444	Uncharacterized protein; sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	0.677
DR97_5796	vreR	DR97_5796	DR97_1443	Uncharacterized protein; sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	annotation not available	0.825
fecI_13	femI	DR97_3967	DR97_5934	sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	0.479
fecI_13	fiuI	DR97_3967	DR97_3440	sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	0.557
fecI_13	foxI	DR97_3967	DR97_5706	sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	annotation not available	0.549
fecI_13	pvdS	DR97_3967	DR97_6007	sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	Uncharacterized protein; sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	0.565
fecI_13	vreI	DR97_3967	DR97_1444	sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	0.682
fecI_13	vreR	DR97_3967	DR97_1443	sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	annotation not available	0.822
femI	fecI_13	DR97_5934	DR97_3967	sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	0.479

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