STRINGSTRING
pimC protein (Pseudomonas aeruginosa) - STRING interaction network
"pimC" - annotation not available in Pseudomonas aeruginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pimCannotation not available (371 aa)    
Predicted Functional Partners:
DR97_1487
Conserved hypothetical protein (253 aa)
 
   
  0.975
DR97_1489
TIGR00374 family protein (333 aa)
 
          0.965
pslG
annotation not available (442 aa)
         
  0.762
rhsB
annotation not available (430 aa)
           
  0.750
nagZ
Beta-hexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide-linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N-acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides; Belongs to the glycosyl hydrolase 3 family. NagZ subfamily (332 aa)
           
  0.717
DR97_5597
annotation not available (447 aa)
   
   
  0.620
DR97_102
annotation not available (231 aa)
     
   
  0.608
flgJ
Peptidoglycan hydrolase flgJ; flagell_FlgJ- flagellar rod assembly protein/muramidase FlgJ (400 aa)
           
  0.579
namA
NADPH dehydrogenase; NADH-flavin oxidoreductase / NADH oxidase family protein (368 aa)
     
        0.535
DR97_3452
annotation not available (171 aa)
     
        0.527
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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