rpoN protein (Pseudomonas aeruginosa) - STRING interaction network

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Score

rpoN

RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (497 aa)

Predicted Functional Partners:

pilR

0.988

fleQ

0.964

rpoS

0.962

algU

0.961

ntrC

0.948

rpoD

0.939

fleR

0.934

pilS

0.933

fliA

0.923

DR97_3934

0.920

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_3934	rpoN	DR97_3934	DR97_1641	annotation not available	RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	0.920
algU	fleQ	DR97_1221	DR97_840	rpoE_Sigma70: RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily	annotation not available	0.729
algU	fliA	DR97_1221	DR97_568	rpoE_Sigma70: RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily	RNA polymerase sigma factor FliA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes	0.604
algU	rpoD	DR97_1221	DR97_3545	rpoE_Sigma70: RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth	0.907
algU	rpoN	DR97_1221	DR97_1641	rpoE_Sigma70: RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily	RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	0.961
algU	rpoS	DR97_1221	DR97_4317	rpoE_Sigma70: RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily	rpoS_proteo: RNA polymerase sigma factor RpoS	0.930
fleQ	algU	DR97_840	DR97_1221	annotation not available	rpoE_Sigma70: RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily	0.729
fleQ	fleR	DR97_840	DR97_838	annotation not available	annotation not available	0.713
fleQ	fliA	DR97_840	DR97_568	annotation not available	RNA polymerase sigma factor FliA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes	0.927
fleQ	ntrC	DR97_840	DR97_2479	annotation not available	Sigma-54-dependent Fis family transcriptional regulator; ntrC: nitrogen regulation protein NR	0.401
fleQ	rpoN	DR97_840	DR97_1641	annotation not available	RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	0.964
fleQ	rpoS	DR97_840	DR97_4317	annotation not available	rpoS_proteo: RNA polymerase sigma factor RpoS	0.530
fleR	fleQ	DR97_838	DR97_840	annotation not available	annotation not available	0.713
fleR	fliA	DR97_838	DR97_568	annotation not available	RNA polymerase sigma factor FliA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes	0.888
fleR	rpoN	DR97_838	DR97_1641	annotation not available	RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	0.934
fliA	algU	DR97_568	DR97_1221	RNA polymerase sigma factor FliA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes	rpoE_Sigma70: RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily	0.604
fliA	fleQ	DR97_568	DR97_840	RNA polymerase sigma factor FliA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes	annotation not available	0.927
fliA	fleR	DR97_568	DR97_838	RNA polymerase sigma factor FliA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes	annotation not available	0.888
fliA	ntrC	DR97_568	DR97_2479	RNA polymerase sigma factor FliA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes	Sigma-54-dependent Fis family transcriptional regulator; ntrC: nitrogen regulation protein NR	0.509
fliA	pilR	DR97_568	DR97_1851	RNA polymerase sigma factor FliA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes	annotation not available	0.406

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