node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
raiA | rpsC | DR97_1642 | DR97_3654 | Putative sigma-54 modulation protein; Ribosome hibernation promoting factor; yfiA: ribosomal subunit interface protein | Small subunit ribosomal protein s3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation | 0.998 |
raiA | rpsE | DR97_1642 | DR97_3665 | Putative sigma-54 modulation protein; Ribosome hibernation promoting factor; yfiA: ribosomal subunit interface protein | Small subunit ribosomal protein s5; With S4 and S12 plays an important role in translational accuracy | 0.998 |
raiA | rpsF | DR97_1642 | DR97_2286 | Putative sigma-54 modulation protein; Ribosome hibernation promoting factor; yfiA: ribosomal subunit interface protein | Small subunit ribosomal protein s6; Binds together with S18 to 16S ribosomal RNA | 0.998 |
raiA | rpsG | DR97_1642 | DR97_3644 | Putative sigma-54 modulation protein; Ribosome hibernation promoting factor; yfiA: ribosomal subunit interface protein | Small subunit ribosomal protein s7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA | 0.998 |
raiA | rpsH | DR97_1642 | DR97_3662 | Putative sigma-54 modulation protein; Ribosome hibernation promoting factor; yfiA: ribosomal subunit interface protein | Small subunit ribosomal protein s8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit | 0.998 |
raiA | rpsI | DR97_1642 | DR97_1610 | Putative sigma-54 modulation protein; Ribosome hibernation promoting factor; yfiA: ribosomal subunit interface protein | Small subunit ribosomal protein s9; Belongs to the universal ribosomal protein uS9 family | 0.998 |
raiA | rpsO | DR97_1642 | DR97_2084 | Putative sigma-54 modulation protein; Ribosome hibernation promoting factor; yfiA: ribosomal subunit interface protein | Small subunit ribosomal protein s15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA | 0.998 |
raiA | rpsQ | DR97_1642 | DR97_3657 | Putative sigma-54 modulation protein; Ribosome hibernation promoting factor; yfiA: ribosomal subunit interface protein | Small subunit ribosomal protein s17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA | 0.998 |
raiA | rpsR | DR97_1642 | DR97_2285 | Putative sigma-54 modulation protein; Ribosome hibernation promoting factor; yfiA: ribosomal subunit interface protein | Small subunit ribosomal protein s18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit | 0.998 |
raiA | rpsS | DR97_1642 | DR97_3652 | Putative sigma-54 modulation protein; Ribosome hibernation promoting factor; yfiA: ribosomal subunit interface protein | Small subunit ribosomal protein s19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA | 0.998 |
rpsC | raiA | DR97_3654 | DR97_1642 | Small subunit ribosomal protein s3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation | Putative sigma-54 modulation protein; Ribosome hibernation promoting factor; yfiA: ribosomal subunit interface protein | 0.998 |
rpsC | rpsE | DR97_3654 | DR97_3665 | Small subunit ribosomal protein s3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation | Small subunit ribosomal protein s5; With S4 and S12 plays an important role in translational accuracy | 0.999 |
rpsC | rpsF | DR97_3654 | DR97_2286 | Small subunit ribosomal protein s3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation | Small subunit ribosomal protein s6; Binds together with S18 to 16S ribosomal RNA | 0.999 |
rpsC | rpsG | DR97_3654 | DR97_3644 | Small subunit ribosomal protein s3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation | Small subunit ribosomal protein s7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA | 0.999 |
rpsC | rpsH | DR97_3654 | DR97_3662 | Small subunit ribosomal protein s3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation | Small subunit ribosomal protein s8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit | 0.999 |
rpsC | rpsI | DR97_3654 | DR97_1610 | Small subunit ribosomal protein s3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation | Small subunit ribosomal protein s9; Belongs to the universal ribosomal protein uS9 family | 0.999 |
rpsC | rpsO | DR97_3654 | DR97_2084 | Small subunit ribosomal protein s3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation | Small subunit ribosomal protein s15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA | 0.999 |
rpsC | rpsQ | DR97_3654 | DR97_3657 | Small subunit ribosomal protein s3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation | Small subunit ribosomal protein s17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA | 0.999 |
rpsC | rpsR | DR97_3654 | DR97_2285 | Small subunit ribosomal protein s3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation | Small subunit ribosomal protein s18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit | 0.999 |
rpsC | rpsS | DR97_3654 | DR97_3652 | Small subunit ribosomal protein s3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation | Small subunit ribosomal protein s19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA | 0.999 |