STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
raiARibosome hibernation promoting factor; yfiA: ribosomal subunit interface protein (102 aa)    
Predicted Functional Partners:
ptsN
PTS fructose transporter subunit IIA; nitro_reg_IIA: PTS IIA-like nitrogen-regulatory protein PtsN
 
  
 0.938
DR97_1644
Nucleotide-binding protein AO964_07660; Displays ATPase and GTPase activities
 
  
 0.908
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
  
  
 0.815
ptsH
PTS_HPr_: phosphocarrier, HPr family protein
     
 0.808
rpmH
rpmH_bact: ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family
   
 
 0.794
rplP
50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
   
 
 0.790
rpsU
S21p: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family
 
 
 
 0.789
rpmC
L29: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family
   
 
 0.778
rpsJ
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes
   
   0.768
rpmD
rpmD_bact: ribosomal protein L30
    
   0.757
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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