dppA5 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

dppA5

annotation not available (533 aa)

Predicted Functional Partners:

dppB

0.976

dppC

0.975

dppF

0.970

dppD

0.969

livJ

0.746

braC

0.743

argT3

0.721

DR97_277

0.630

DR97_6122

0.629

mltB1

0.550

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_277	DR97_6122	DR97_277	DR97_6122	annotation not available	annotation not available	0.854
DR97_277	dppA5	DR97_277	DR97_1679	annotation not available	annotation not available	0.630
DR97_6122	DR97_277	DR97_6122	DR97_277	annotation not available	annotation not available	0.854
DR97_6122	dppA5	DR97_6122	DR97_1679	annotation not available	annotation not available	0.629
argT3	braC	DR97_1055	DR97_869	3A0103s03R- lysine-arginine-ornithine-binding periplasmic family protein; Belongs to the bacterial solute-binding protein 3 family	annotation not available	0.729
argT3	dppA5	DR97_1055	DR97_1679	3A0103s03R- lysine-arginine-ornithine-binding periplasmic family protein; Belongs to the bacterial solute-binding protein 3 family	annotation not available	0.721
braC	argT3	DR97_869	DR97_1055	annotation not available	3A0103s03R- lysine-arginine-ornithine-binding periplasmic family protein; Belongs to the bacterial solute-binding protein 3 family	0.729
braC	dppA5	DR97_869	DR97_1679	annotation not available	annotation not available	0.743
braC	livJ	DR97_869	DR97_2264	annotation not available	annotation not available	0.831
dppA5	DR97_277	DR97_1679	DR97_277	annotation not available	annotation not available	0.630
dppA5	DR97_6122	DR97_1679	DR97_6122	annotation not available	annotation not available	0.629
dppA5	argT3	DR97_1679	DR97_1055	annotation not available	3A0103s03R- lysine-arginine-ornithine-binding periplasmic family protein; Belongs to the bacterial solute-binding protein 3 family	0.721
dppA5	braC	DR97_1679	DR97_869	annotation not available	annotation not available	0.743
dppA5	dppB	DR97_1679	DR97_1682	annotation not available	annotation not available	0.976
dppA5	dppC	DR97_1679	DR97_1683	annotation not available	annotation not available	0.975
dppA5	dppD	DR97_1679	DR97_1684	annotation not available	oligo_HPY- oligopeptide/dipeptide ABC transporter, ATP-binding , C-terminal domain protein; Belongs to the ABC transporter superfamily	0.969
dppA5	dppF	DR97_1679	DR97_1685	annotation not available	oligo_HPY- oligopeptide/dipeptide ABC transporter, ATP-binding , C-terminal domain protein; Belongs to the ABC transporter superfamily	0.970
dppA5	livJ	DR97_1679	DR97_2264	annotation not available	annotation not available	0.746
dppA5	mltB1	DR97_1679	DR97_3866	annotation not available	mltB- lytic murein transglycosylase B	0.550
dppB	dppA5	DR97_1682	DR97_1679	annotation not available	annotation not available	0.976

page 1 of 2

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2019

Credits

Access

Info

About