STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
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[Homology]
Score
pscDtype_III_yscD: type III secretion apparatus protein, YscD/HrpQ family (432 aa)    
Predicted Functional Partners:
pscC
Yop proteins translocation protein C; type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family
 
 
 0.999
pscL
Yop proteins translocation protein L; hrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family
 
 
 0.996
pscJ
III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family
 
 
 0.986
pscB
Type III export apparatus protein; type_III_yscB: type III secretion system chaperone, YscB family
  
  
 0.975
popN
Outer membrane protein yopN; lcrE: type III secretion regulator YopN/LcrE/InvE/MxiC
 
  
 0.962
PscN
Putative ATP synthase YscN; III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
 
 
 0.958
pcrH
lcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD
 
 
 0.954
yscU
annotation not available
 
  
 0.953
pscI
yscI_hrpB_dom: type III secretion apparatus protein, YscI/HrpB, C-terminal domain
  
  
 0.951
eprI
Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages
  
  
 0.949
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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