Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GspE | PilC | DR97_2579 | DR97_1708 | General secretion pathway protein e; Type II secretion system (T2SS), E, N-terminal domain protein | annotation not available | 0.955 |
GspE | hxcR | DR97_2579 | DR97_1433 | General secretion pathway protein e; Type II secretion system (T2SS), E, N-terminal domain protein | Involved in a type II secretion system (T2SS) for the export of proteins. Probably required for the translocation of a variety of proteins across the outer membrane | 0.818 |
GspE | pilA | DR97_2579 | DR97_1706 | General secretion pathway protein e; Type II secretion system (T2SS), E, N-terminal domain protein | annotation not available | 0.627 |
GspE | pilD | DR97_2579 | DR97_1709 | General secretion pathway protein e; Type II secretion system (T2SS), E, N-terminal domain protein | Leader peptidase (prepilin peptidase) / n-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. Processes the pilin precursor during membrane translocation. Required for the assembly of type IV pili and for secretion of most proteins | 0.929 |
GspE | pilN | DR97_2579 | DR97_2398 | General secretion pathway protein e; Type II secretion system (T2SS), E, N-terminal domain protein | annotation not available | 0.611 |
GspE | pilO | DR97_2579 | DR97_2397 | General secretion pathway protein e; Type II secretion system (T2SS), E, N-terminal domain protein | annotation not available | 0.582 |
GspE | pilT | DR97_2579 | DR97_3363 | General secretion pathway protein e; Type II secretion system (T2SS), E, N-terminal domain protein | Twitching motility protein pilt; May be involved in pilus retraction | 0.566 |
GspE | pilU | DR97_2579 | DR97_3364 | General secretion pathway protein e; Type II secretion system (T2SS), E, N-terminal domain protein | pilT_fam: twitching motility family protein | 0.507 |
GspE | xcpR | DR97_2579 | DR97_4830 | General secretion pathway protein e; Type II secretion system (T2SS), E, N-terminal domain protein | Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. Required for the translocation of a variety of enzymes across the outer membrane | 0.819 |
PilC | GspE | DR97_1708 | DR97_2579 | annotation not available | General secretion pathway protein e; Type II secretion system (T2SS), E, N-terminal domain protein | 0.955 |
PilC | hxcR | DR97_1708 | DR97_1433 | annotation not available | Involved in a type II secretion system (T2SS) for the export of proteins. Probably required for the translocation of a variety of proteins across the outer membrane | 0.950 |
PilC | pilA | DR97_1708 | DR97_1706 | annotation not available | annotation not available | 0.989 |
PilC | pilB | DR97_1708 | DR97_1707 | annotation not available | type_IV_pilB: type IV-A pilus assembly ATPase PilB | 0.999 |
PilC | pilD | DR97_1708 | DR97_1709 | annotation not available | Leader peptidase (prepilin peptidase) / n-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. Processes the pilin precursor during membrane translocation. Required for the assembly of type IV pili and for secretion of most proteins | 0.998 |
PilC | pilN | DR97_1708 | DR97_2398 | annotation not available | annotation not available | 0.963 |
PilC | pilO | DR97_1708 | DR97_2397 | annotation not available | annotation not available | 0.948 |
PilC | pilT | DR97_1708 | DR97_3363 | annotation not available | Twitching motility protein pilt; May be involved in pilus retraction | 0.998 |
PilC | pilU | DR97_1708 | DR97_3364 | annotation not available | pilT_fam: twitching motility family protein | 0.983 |
PilC | xcpR | DR97_1708 | DR97_4830 | annotation not available | Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. Required for the translocation of a variety of enzymes across the outer membrane | 0.971 |
hxcR | GspE | DR97_1433 | DR97_2579 | Involved in a type II secretion system (T2SS) for the export of proteins. Probably required for the translocation of a variety of proteins across the outer membrane | General secretion pathway protein e; Type II secretion system (T2SS), E, N-terminal domain protein | 0.818 |
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