STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pscCYop proteins translocation protein C; type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family (600 aa)    
Predicted Functional Partners:
pscD
type_III_yscD: type III secretion apparatus protein, YscD/HrpQ family
 
 
 0.999
pscJ
III_secr_YscJ: type III secretion apparatus lipoprotein, YscJ/HrcJ family
 
 
 0.998
pscL
Yop proteins translocation protein L; hrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family
 
  
 0.995
pcrD
hrcV: type III secretion , HrcV family protein
 
 
 0.994
eprI
Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages
  
  
 0.988
pscB
Type III export apparatus protein; type_III_yscB: type III secretion system chaperone, YscB family
  
  
 0.988
epaR
Yop proteins translocation protein T; fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT
 
 
 0.985
pscG
Type iii secretion protein, yscg family; Prevents premature polymerization of PscF, along with PscE, within the cytoplasm. Required for type III secretion needle assembly. Also required for cytotoxicity by influencing PscF levels
  
  
 0.973
pscI
yscI_hrpB_dom: type III secretion apparatus protein, YscI/HrpB, C-terminal domain
  
  
 0.967
popN
Outer membrane protein yopN; lcrE: type III secretion regulator YopN/LcrE/InvE/MxiC
 
  
 0.937
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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