Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
eprI | exsD | DR97_168 | DR97_173 | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | annotation not available | 0.929 |
eprI | popN | DR97_168 | DR97_189 | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | Outer membrane protein yopN; lcrE: type III secretion regulator YopN/LcrE/InvE/MxiC | 0.833 |
eprI | pscB | DR97_168 | DR97_172 | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | Type III export apparatus protein; type_III_yscB: type III secretion system chaperone, YscB family | 0.946 |
eprI | pscC | DR97_168 | DR97_171 | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | Yop proteins translocation protein C; type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family | 0.988 |
eprI | pscD | DR97_168 | DR97_170 | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | type_III_yscD: type III secretion apparatus protein, YscD/HrpQ family | 0.949 |
eprI | pscG | DR97_168 | DR97_167 | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | Type iii secretion protein, yscg family; Prevents premature polymerization of PscF, along with PscE, within the cytoplasm. Required for type III secretion needle assembly. Also required for cytotoxicity by influencing PscF levels | 0.999 |
eprI | pscI | DR97_168 | DR97_165 | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | yscI_hrpB_dom: type III secretion apparatus protein, YscI/HrpB, C-terminal domain | 0.992 |
eprI | pscL | DR97_168 | DR97_162 | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | Yop proteins translocation protein L; hrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family | 0.952 |
eprI | sycN | DR97_168 | DR97_187 | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | Putative type iii secretion protein; type_III_SycN: type III secretion chaperone SycN | 0.650 |
eprI | tyeA | DR97_168 | DR97_188 | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | annotation not available | 0.686 |
exsD | eprI | DR97_173 | DR97_168 | annotation not available | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | 0.929 |
exsD | popN | DR97_173 | DR97_189 | annotation not available | Outer membrane protein yopN; lcrE: type III secretion regulator YopN/LcrE/InvE/MxiC | 0.932 |
exsD | pscB | DR97_173 | DR97_172 | annotation not available | Type III export apparatus protein; type_III_yscB: type III secretion system chaperone, YscB family | 0.961 |
exsD | pscC | DR97_173 | DR97_171 | annotation not available | Yop proteins translocation protein C; type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family | 0.839 |
exsD | pscD | DR97_173 | DR97_170 | annotation not available | type_III_yscD: type III secretion apparatus protein, YscD/HrpQ family | 0.852 |
exsD | pscG | DR97_173 | DR97_167 | annotation not available | Type iii secretion protein, yscg family; Prevents premature polymerization of PscF, along with PscE, within the cytoplasm. Required for type III secretion needle assembly. Also required for cytotoxicity by influencing PscF levels | 0.950 |
exsD | pscI | DR97_173 | DR97_165 | annotation not available | yscI_hrpB_dom: type III secretion apparatus protein, YscI/HrpB, C-terminal domain | 0.904 |
exsD | pscL | DR97_173 | DR97_162 | annotation not available | Yop proteins translocation protein L; hrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family | 0.933 |
exsD | sycN | DR97_173 | DR97_187 | annotation not available | Putative type iii secretion protein; type_III_SycN: type III secretion chaperone SycN | 0.676 |
exsD | tyeA | DR97_173 | DR97_188 | annotation not available | annotation not available | 0.709 |
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