Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Pcr3 | exsB | DR97_186 | DR97_175 | type_III_YscX: type III secretion protein, YscX family | Type iii secretion system chaperone yscw; Involved in the synthesis of the type III secretion system (T3SS), also called injectisome, which is used to inject bacterial effector proteins into eukaryotic host cells . Pilot protein that is required for the proper localization of the secretin PscC in the outer membrane . Necessary for full in vivo virulence | 0.770 |
| Pcr3 | exsC | DR97_186 | DR97_177 | type_III_YscX: type III secretion protein, YscX family | annotation not available | 0.644 |
| Pcr3 | exsE | DR97_186 | DR97_176 | type_III_YscX: type III secretion protein, YscX family | annotation not available | 0.801 |
| Pcr3 | pcrD | DR97_186 | DR97_184 | type_III_YscX: type III secretion protein, YscX family | hrcV: type III secretion , HrcV family protein | 0.948 |
| Pcr3 | pcrG | DR97_186 | DR97_182 | type_III_YscX: type III secretion protein, YscX family | lcrG_PcrG: type III secretion protein LcrG | 0.903 |
| Pcr3 | pepD | DR97_186 | DR97_178 | type_III_YscX: type III secretion protein, YscX family | annotation not available | 0.873 |
| Pcr3 | sycN | DR97_186 | DR97_187 | type_III_YscX: type III secretion protein, YscX family | Putative type iii secretion protein; type_III_SycN: type III secretion chaperone SycN | 0.992 |
| Pcr3 | tyeA | DR97_186 | DR97_188 | type_III_YscX: type III secretion protein, YscX family | annotation not available | 0.994 |
| Pcr3 | yopB | DR97_186 | DR97_179 | type_III_YscX: type III secretion protein, YscX family | annotation not available | 0.911 |
| Pcr3 | yscY | DR97_186 | DR97_185 | type_III_YscX: type III secretion protein, YscX family | annotation not available | 0.996 |
| exsB | Pcr3 | DR97_175 | DR97_186 | Type iii secretion system chaperone yscw; Involved in the synthesis of the type III secretion system (T3SS), also called injectisome, which is used to inject bacterial effector proteins into eukaryotic host cells . Pilot protein that is required for the proper localization of the secretin PscC in the outer membrane . Necessary for full in vivo virulence | type_III_YscX: type III secretion protein, YscX family | 0.770 |
| exsB | exsC | DR97_175 | DR97_177 | Type iii secretion system chaperone yscw; Involved in the synthesis of the type III secretion system (T3SS), also called injectisome, which is used to inject bacterial effector proteins into eukaryotic host cells . Pilot protein that is required for the proper localization of the secretin PscC in the outer membrane . Necessary for full in vivo virulence | annotation not available | 0.988 |
| exsB | exsE | DR97_175 | DR97_176 | Type iii secretion system chaperone yscw; Involved in the synthesis of the type III secretion system (T3SS), also called injectisome, which is used to inject bacterial effector proteins into eukaryotic host cells . Pilot protein that is required for the proper localization of the secretin PscC in the outer membrane . Necessary for full in vivo virulence | annotation not available | 0.934 |
| exsB | pcrD | DR97_175 | DR97_184 | Type iii secretion system chaperone yscw; Involved in the synthesis of the type III secretion system (T3SS), also called injectisome, which is used to inject bacterial effector proteins into eukaryotic host cells . Pilot protein that is required for the proper localization of the secretin PscC in the outer membrane . Necessary for full in vivo virulence | hrcV: type III secretion , HrcV family protein | 0.751 |
| exsB | pcrG | DR97_175 | DR97_182 | Type iii secretion system chaperone yscw; Involved in the synthesis of the type III secretion system (T3SS), also called injectisome, which is used to inject bacterial effector proteins into eukaryotic host cells . Pilot protein that is required for the proper localization of the secretin PscC in the outer membrane . Necessary for full in vivo virulence | lcrG_PcrG: type III secretion protein LcrG | 0.889 |
| exsB | pepD | DR97_175 | DR97_178 | Type iii secretion system chaperone yscw; Involved in the synthesis of the type III secretion system (T3SS), also called injectisome, which is used to inject bacterial effector proteins into eukaryotic host cells . Pilot protein that is required for the proper localization of the secretin PscC in the outer membrane . Necessary for full in vivo virulence | annotation not available | 0.858 |
| exsB | sycN | DR97_175 | DR97_187 | Type iii secretion system chaperone yscw; Involved in the synthesis of the type III secretion system (T3SS), also called injectisome, which is used to inject bacterial effector proteins into eukaryotic host cells . Pilot protein that is required for the proper localization of the secretin PscC in the outer membrane . Necessary for full in vivo virulence | Putative type iii secretion protein; type_III_SycN: type III secretion chaperone SycN | 0.803 |
| exsB | tyeA | DR97_175 | DR97_188 | Type iii secretion system chaperone yscw; Involved in the synthesis of the type III secretion system (T3SS), also called injectisome, which is used to inject bacterial effector proteins into eukaryotic host cells . Pilot protein that is required for the proper localization of the secretin PscC in the outer membrane . Necessary for full in vivo virulence | annotation not available | 0.843 |
| exsB | yopB | DR97_175 | DR97_179 | Type iii secretion system chaperone yscw; Involved in the synthesis of the type III secretion system (T3SS), also called injectisome, which is used to inject bacterial effector proteins into eukaryotic host cells . Pilot protein that is required for the proper localization of the secretin PscC in the outer membrane . Necessary for full in vivo virulence | annotation not available | 0.856 |
| exsB | yscY | DR97_175 | DR97_185 | Type iii secretion system chaperone yscw; Involved in the synthesis of the type III secretion system (T3SS), also called injectisome, which is used to inject bacterial effector proteins into eukaryotic host cells . Pilot protein that is required for the proper localization of the secretin PscC in the outer membrane . Necessary for full in vivo virulence | annotation not available | 0.772 |
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