Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
eprI | exoT | DR97_168 | DR97_3001 | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | annotation not available | 0.900 |
eprI | exoY | DR97_168 | DR97_6240 | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | annotation not available | 0.915 |
eprI | exsA | DR97_168 | DR97_174 | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | Arac family transcriptional regulator, exoenzyme s synthesis regulatory protein exsa; Appears to be required for induction of exoenzyme S synthesis above a low basal level | 0.924 |
eprI | lcrV | DR97_168 | DR97_181 | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | annotation not available | 0.933 |
eprI | pcrG | DR97_168 | DR97_182 | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | lcrG_PcrG: type III secretion protein LcrG | 0.882 |
eprI | pcrH | DR97_168 | DR97_180 | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | lcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD | 0.887 |
eprI | pepD | DR97_168 | DR97_178 | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | annotation not available | 0.948 |
eprI | popN | DR97_168 | DR97_189 | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | Outer membrane protein yopN; lcrE: type III secretion regulator YopN/LcrE/InvE/MxiC | 0.833 |
eprI | tyeA | DR97_168 | DR97_188 | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | annotation not available | 0.686 |
eprI | yopB | DR97_168 | DR97_179 | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | annotation not available | 0.944 |
exoT | eprI | DR97_3001 | DR97_168 | annotation not available | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | 0.900 |
exoT | exoY | DR97_3001 | DR97_6240 | annotation not available | annotation not available | 0.927 |
exoT | exsA | DR97_3001 | DR97_174 | annotation not available | Arac family transcriptional regulator, exoenzyme s synthesis regulatory protein exsa; Appears to be required for induction of exoenzyme S synthesis above a low basal level | 0.897 |
exoT | lcrV | DR97_3001 | DR97_181 | annotation not available | annotation not available | 0.947 |
exoT | pcrG | DR97_3001 | DR97_182 | annotation not available | lcrG_PcrG: type III secretion protein LcrG | 0.897 |
exoT | pcrH | DR97_3001 | DR97_180 | annotation not available | lcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD | 0.821 |
exoT | pepD | DR97_3001 | DR97_178 | annotation not available | annotation not available | 0.929 |
exoT | popN | DR97_3001 | DR97_189 | annotation not available | Outer membrane protein yopN; lcrE: type III secretion regulator YopN/LcrE/InvE/MxiC | 0.876 |
exoT | tyeA | DR97_3001 | DR97_188 | annotation not available | annotation not available | 0.567 |
exoT | yopB | DR97_3001 | DR97_179 | annotation not available | annotation not available | 0.883 |
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