Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_1728 | DR97_1756 | DR97_1728 | DR97_1756 | Hypothetical protein; Uncharacterized protein | annotation not available | 0.772 |
DR97_1728 | DR97_1840 | DR97_1728 | DR97_1840 | Hypothetical protein; Uncharacterized protein | Relaxase; ICE_TraI_Pfluor: integrating conjugative element relaxase, PFGI-1 class | 0.461 |
DR97_1728 | DR97_1841 | DR97_1728 | DR97_1841 | Hypothetical protein; Uncharacterized protein | annotation not available | 0.676 |
DR97_1756 | DR97_1728 | DR97_1756 | DR97_1728 | annotation not available | Hypothetical protein; Uncharacterized protein | 0.772 |
DR97_1756 | DR97_1840 | DR97_1756 | DR97_1840 | annotation not available | Relaxase; ICE_TraI_Pfluor: integrating conjugative element relaxase, PFGI-1 class | 0.767 |
DR97_1756 | DR97_1841 | DR97_1756 | DR97_1841 | annotation not available | annotation not available | 0.700 |
DR97_1840 | DR97_1728 | DR97_1840 | DR97_1728 | Relaxase; ICE_TraI_Pfluor: integrating conjugative element relaxase, PFGI-1 class | Hypothetical protein; Uncharacterized protein | 0.461 |
DR97_1840 | DR97_1756 | DR97_1840 | DR97_1756 | Relaxase; ICE_TraI_Pfluor: integrating conjugative element relaxase, PFGI-1 class | annotation not available | 0.767 |
DR97_1840 | DR97_1841 | DR97_1840 | DR97_1841 | Relaxase; ICE_TraI_Pfluor: integrating conjugative element relaxase, PFGI-1 class | annotation not available | 0.905 |
DR97_1841 | DR97_1728 | DR97_1841 | DR97_1728 | annotation not available | Hypothetical protein; Uncharacterized protein | 0.676 |
DR97_1841 | DR97_1756 | DR97_1841 | DR97_1756 | annotation not available | annotation not available | 0.700 |
DR97_1841 | DR97_1840 | DR97_1841 | DR97_1840 | annotation not available | Relaxase; ICE_TraI_Pfluor: integrating conjugative element relaxase, PFGI-1 class | 0.905 |
DR97_1841 | DR97_311 | DR97_1841 | DR97_311 | annotation not available | annotation not available | 0.851 |
DR97_1841 | DR97_4687 | DR97_1841 | DR97_4687 | annotation not available | annotation not available | 0.852 |
DR97_1841 | dapF | DR97_1841 | DR97_2649 | annotation not available | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan | 0.741 |
DR97_1841 | ftsK | DR97_1841 | DR97_5347 | annotation not available | Dna segregation atpase ftsk/spoiiie, s-dna-t family; Essential cell division protein that coordinates cell division and chromosome segregation. The N-terminus is involved in assembly of the cell-division machinery. The C-terminus functions as a DNA motor that moves dsDNA in an ATP-dependent manner towards the dif recombination site, which is located within the replication terminus region. Translocation stops specifically at Xer-dif sites, where FtsK interacts with the Xer recombinase, allowing activation of chromosome unlinking by recombination. FtsK orienting polar sequences (KOPS) gu [...] | 0.886 |
DR97_1841 | ruvB | DR97_1841 | DR97_970 | annotation not available | The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing | 0.754 |
DR97_1841 | ruvC | DR97_1841 | DR97_972 | annotation not available | Crossover junction endodeoxyribonuclease ruvc; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group (By similarity) | 0.688 |
DR97_1841 | xerD | DR97_1841 | DR97_4138 | annotation not available | Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids | 0.817 |
DR97_311 | DR97_1841 | DR97_311 | DR97_1841 | annotation not available | annotation not available | 0.851 |
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