pilR protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

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[Homology]

Score

pilR

annotation not available (445 aa)

Predicted Functional Partners:

pilS

0.998

rpoN

0.988

pilA

0.876

DR97_1849

0.818

pilU

0.808

DR97_3759

0.784

pilC

0.778

pilT

0.778

pilB

0.766

pilN

0.712

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_1849	pilR	DR97_1849	DR97_1851	Putative membrane protein	annotation not available	0.818
DR97_1849	pilS	DR97_1849	DR97_1850	Putative membrane protein	annotation not available	0.891
DR97_3759	pilR	DR97_3759	DR97_1851	annotation not available	annotation not available	0.784
DR97_3759	pilS	DR97_3759	DR97_1850	annotation not available	annotation not available	0.439
DR97_3759	rpoN	DR97_3759	DR97_1641	annotation not available	RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	0.662
pilA	pilB	DR97_1706	DR97_1707	annotation not available	type_IV_pilB: type IV-A pilus assembly ATPase PilB	0.974
pilA	pilC	DR97_1706	DR97_1708	annotation not available	annotation not available	0.989
pilA	pilN	DR97_1706	DR97_2398	annotation not available	annotation not available	0.828
pilA	pilR	DR97_1706	DR97_1851	annotation not available	annotation not available	0.876
pilA	pilS	DR97_1706	DR97_1850	annotation not available	annotation not available	0.874
pilA	pilT	DR97_1706	DR97_3363	annotation not available	annotation not available	0.970
pilA	pilU	DR97_1706	DR97_3364	annotation not available	pilT_fam: twitching motility family protein	0.957
pilA	rpoN	DR97_1706	DR97_1641	annotation not available	RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	0.717
pilB	pilA	DR97_1707	DR97_1706	type_IV_pilB: type IV-A pilus assembly ATPase PilB	annotation not available	0.974
pilB	pilC	DR97_1707	DR97_1708	type_IV_pilB: type IV-A pilus assembly ATPase PilB	annotation not available	0.998
pilB	pilN	DR97_1707	DR97_2398	type_IV_pilB: type IV-A pilus assembly ATPase PilB	annotation not available	0.922
pilB	pilR	DR97_1707	DR97_1851	type_IV_pilB: type IV-A pilus assembly ATPase PilB	annotation not available	0.766
pilB	pilS	DR97_1707	DR97_1850	type_IV_pilB: type IV-A pilus assembly ATPase PilB	annotation not available	0.774
pilB	pilT	DR97_1707	DR97_3363	type_IV_pilB: type IV-A pilus assembly ATPase PilB	annotation not available	0.564
pilB	pilU	DR97_1707	DR97_3364	type_IV_pilB: type IV-A pilus assembly ATPase PilB	pilT_fam: twitching motility family protein	0.614

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