Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_1849 | pilR | DR97_1849 | DR97_1851 | Uncharacterized protein; Putative membrane protein | Two-component system, ntrc family, response regulator pilr; Member of the two-component regulatory system PilS/PilR that regulates the expression of type 4 fimbriae. When activated by PilS it acts in conjunction with sigma-54 as a transcriptional activator | 0.818 |
DR97_1849 | pilS | DR97_1849 | DR97_1850 | Uncharacterized protein; Putative membrane protein | Two-component system, ntrc family, sensor histidine kinase pils; Member of the two-component regulatory system PilS/PilR involved in the regulation of the expression of type 4 fimbriae. PilS may function as a membrane-associated protein kinase that phosphorylates PilR in response to environmental signals | 0.891 |
DR97_3569 | DR97_3759 | DR97_3569 | DR97_3759 | annotation not available | annotation not available | 0.898 |
DR97_3569 | pilR | DR97_3569 | DR97_1851 | annotation not available | Two-component system, ntrc family, response regulator pilr; Member of the two-component regulatory system PilS/PilR that regulates the expression of type 4 fimbriae. When activated by PilS it acts in conjunction with sigma-54 as a transcriptional activator | 0.816 |
DR97_3569 | pilS | DR97_3569 | DR97_1850 | annotation not available | Two-component system, ntrc family, sensor histidine kinase pils; Member of the two-component regulatory system PilS/PilR involved in the regulation of the expression of type 4 fimbriae. PilS may function as a membrane-associated protein kinase that phosphorylates PilR in response to environmental signals | 0.487 |
DR97_3569 | rpoN | DR97_3569 | DR97_1641 | annotation not available | Rna polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released | 0.577 |
DR97_3759 | DR97_3569 | DR97_3759 | DR97_3569 | annotation not available | annotation not available | 0.898 |
DR97_3759 | pilR | DR97_3759 | DR97_1851 | annotation not available | Two-component system, ntrc family, response regulator pilr; Member of the two-component regulatory system PilS/PilR that regulates the expression of type 4 fimbriae. When activated by PilS it acts in conjunction with sigma-54 as a transcriptional activator | 0.854 |
DR97_3759 | pilS | DR97_3759 | DR97_1850 | annotation not available | Two-component system, ntrc family, sensor histidine kinase pils; Member of the two-component regulatory system PilS/PilR involved in the regulation of the expression of type 4 fimbriae. PilS may function as a membrane-associated protein kinase that phosphorylates PilR in response to environmental signals | 0.582 |
DR97_3759 | rpoN | DR97_3759 | DR97_1641 | annotation not available | Rna polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released | 0.722 |
PilC | pilB | DR97_1708 | DR97_1707 | annotation not available | type_IV_pilB: type IV-A pilus assembly ATPase PilB | 0.999 |
PilC | pilN | DR97_1708 | DR97_2398 | annotation not available | annotation not available | 0.963 |
PilC | pilR | DR97_1708 | DR97_1851 | annotation not available | Two-component system, ntrc family, response regulator pilr; Member of the two-component regulatory system PilS/PilR that regulates the expression of type 4 fimbriae. When activated by PilS it acts in conjunction with sigma-54 as a transcriptional activator | 0.861 |
PilC | pilS | DR97_1708 | DR97_1850 | annotation not available | Two-component system, ntrc family, sensor histidine kinase pils; Member of the two-component regulatory system PilS/PilR involved in the regulation of the expression of type 4 fimbriae. PilS may function as a membrane-associated protein kinase that phosphorylates PilR in response to environmental signals | 0.753 |
PilC | pilT | DR97_1708 | DR97_3363 | annotation not available | Twitching motility protein pilt; May be involved in pilus retraction | 0.998 |
PilC | pilU | DR97_1708 | DR97_3364 | annotation not available | pilT_fam: twitching motility family protein | 0.983 |
pilB | PilC | DR97_1707 | DR97_1708 | type_IV_pilB: type IV-A pilus assembly ATPase PilB | annotation not available | 0.999 |
pilB | pilN | DR97_1707 | DR97_2398 | type_IV_pilB: type IV-A pilus assembly ATPase PilB | annotation not available | 0.939 |
pilB | pilR | DR97_1707 | DR97_1851 | type_IV_pilB: type IV-A pilus assembly ATPase PilB | Two-component system, ntrc family, response regulator pilr; Member of the two-component regulatory system PilS/PilR that regulates the expression of type 4 fimbriae. When activated by PilS it acts in conjunction with sigma-54 as a transcriptional activator | 0.852 |
pilB | pilS | DR97_1707 | DR97_1850 | type_IV_pilB: type IV-A pilus assembly ATPase PilB | Two-component system, ntrc family, sensor histidine kinase pils; Member of the two-component regulatory system PilS/PilR involved in the regulation of the expression of type 4 fimbriae. PilS may function as a membrane-associated protein kinase that phosphorylates PilR in response to environmental signals | 0.745 |
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