STRINGSTRING
pra protein (Pseudomonas aeruginosa) - STRING interaction network
"pra" - annotation not available in Pseudomonas aeruginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
praannotation not available (162 aa)    
Predicted Functional Partners:
ci
annotation not available (256 aa)
           
  0.629
lasB
annotation not available (498 aa)
     
   
  0.569
opmL
annotation not available (425 aa)
     
        0.562
prtN
annotation not available (104 aa)
           
  0.553
dcd2A
annotation not available (670 aa)
           
  0.550
phzH
Potential phenazine-modifying enzyme; asn_synth_AEB- asparagine synthase (610 aa)
     
        0.539
DR97_5970
type_I_hlyD- type I secretion membrane fusion , HlyD family protein (395 aa)
     
        0.532
DR97_5971
Uncharacterized protein; type_I_sec_LssB- type I secretion system ATPase family protein (723 aa)
     
        0.525
puuR_1
annotation not available (187 aa)
     
        0.516
lecB
annotation not available (115 aa)
     
        0.510
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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