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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
epaOspaO_YscQ: type III secretion apparatus protein, YscQ/HrcQ family (309 aa)    
Predicted Functional Partners:
yscL
Yop proteins translocation protein L; hrpE_YscL_not: type III secretion apparatus protein, HrpE/YscL family
 
 
 0.988
epaR
Yop proteins translocation protein T; fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT
 
  
 0.986
pscS
Uncharacterized protein; fliQ_rel_III: type III secretion , HrpO family protein
 
  
 0.975
yscU
annotation not available
 
  
 0.974
epaP
Putative secreted protein; yscR: type III secretion apparatus protein, YscR/HrcR family
 
  
 0.963
flgJ
Peptidoglycan hydrolase flgJ; flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ
  
  
 0.955
fliG
Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
  
 
 0.933
pscP
type_III_yscP: type III secretion system needle length determinant
  
  
 0.928
fliM
Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
  
 
 0.914
yscN
Putative ATP synthase YscN; III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase
 
 
 0.897
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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